Volume 5 • 2023

JSSR

A high-resolution and efficient system for analyzing and labeling ice images

• ABISHEK KANTHAN,
• PATRICK O’BRIEN,
• Theodore Spanbauer
• and Chaowei Yang

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

ArcCI Development

• PATRICK O’BRIEN,
• ABISHEK KANTHAN,
• Theodore Spanbauer,
• Grady Hollar
• and Chaowei Yang

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Improving Accuracy in PM2.5 Interpolation Using AI and ML

• ANDREW YANG,
• Anusha Srirenganathan
• and Chaowei Yang

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Using Automated Processes Using GES DISC API to Help Users Easily Access Data of Air Quality Events

• NIKITA RAO,
• Anusha Srirenganathan Malarvizhi
• and Chaowei Yang

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Utilizing PurpleAir Sensors for Real-Time Visualization and Analysis of Region-Specific PM2.5 Air Pollution Data 

• AHAAN SHAH,
• Jiakang Liu
• and Chaowei Yang

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Machine Learning Gap-Filling AOD Models for High Resolution PM2.5 Predictions: Assessing Wildfire Impact on Air Quality in US Northeastern States

• PHOEBE PAN,
• Anusha Srirenganathan
• and Chaowei Yang

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Use of Machine Learning and Regression Methods in processing PM2.5 Air Pollutants

• LAWRENCE SUN,
• Jiakang Liu
• and Chaowei Yang

• 30 October 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Using Segment Anything (SAM) and Autodistill to Automatically Label Multispectral Data While Rapidly Decreasing Model Creation Time

• ARYAV GOGIA,
• Jim Gallagher,
• Edward Oughton
• and Bonface Osoro

• 1 November 2023
• Volume 5 • 2023
• College of Science: Department of Geography and Geoinformation Science

JSSR

Analyzing High School Student Mental Health using SEITR Compartmental Model of Epidemiology

• SASHWAT RAVISHANKAR,
• Alonso Ogueda
• and Padmanabhan Seshaiyer

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Mathematical Sciences

JSSR

Studying the Influence of Income Differences and Credit History on Racial Disparities in the Mortgage Market using Machine Learning

• AMAR KANAKAMEDALA,
• Vishruth Ganesh,
• Alonso Ogueda-Oliva
• and Padmanabhan Seshaiyer

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Mathematical Sciences

JSSR

Mathematical Modeling and Numerical Analysis of Population Dynamics: Unraveling the Migration Patterns of Ukrainians during the 2022-2023 War

• DANIELLE SITALO
• and Padmanabhan Seshaiyer

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Mathematical Sciences

JSSR

Predicting Dancers’ Jumping Patterns through the Health of Bone Cartilage Using Mathematical Modelling and Simulation

• NATASHA GROVES
• and Padmanabhan Seshaiyer

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Mathematical Sciences

JSSR

Understanding the spread of racism through mathematical modeling, analysis and simulation

• NOSSIM MSECHU,
• Alonso Ogueda
• and Padmanabhan Seshaiyer

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Mathematical Sciences

JSSR

Observational Constraints on Circumplanetary Material Orbiting a Young Exoplanet

• ADITEYA BANERJEE
• and Peter Plavchan

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

Analyzing modal noise in non-circular core fibers using a python script to visualize the standard deviation of light intensity across multiple images to reduce modal noise in spectrograph instrumentation

• ALEXANDER J. DORSEY
• and Peter Plavchan

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

Searching for Exoplanets with Radial Velocities from the MINERVA Telescope Array

• AZMERA GEBRE
• and Peter Plavchan

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

Measuring and Calculating Velocity of Material Along Solar Coronal Magnetic Loops

• ARUSHI SURVE,
• SOWMYA VENKATESH,
• SAMANTHA BLOOMQUIST
• and Arthur Poland

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

Fluctuations in the Martian atmosphere due to solar events that affect the planet’s climate

• ANANYA PAMAL
• and Erdal Yiğit

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

Ionospheric Variations During a Hurricane: Insights from COSMIC-2

• BENJAMIN KNIGGE,
• Ayden Gann
• and Erdal Yiğit

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

Variability of Venusian ionospheric electron density as observed by Pioneer Venus Orbiter and Venera 15/16 missions

• EMILIA SLOAN
• and Erdal Yiğit

• 27 October 2023
• Volume 5 • 2023
• College of Science: Department of Physics and Astronomy

JSSR

HIV-1 Transcription Inhibition Using Small RNA-Binding Molecules

• MAYA PASHAI,
• Yuriy Kim,
• Anastasia Williams
• and Fatah Kashanchi

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Effect of Extracellular Vesicles from HTLV-1 Infected Cells on Recipient Uninfected Cells

• ARNAV SUBEDI
• and Fatah Kashanchi

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

The Use of CBD and HU308 in HIV-1 Infected cells and their response to M1

• SABRINA ROJAS,
• Anastasia Williams
• and Fatah Kashanchi

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Assessing the Immunogenicity of DNA Scaffolding for Hybrid Molecular Modalities in THP-1 Cells

• Hanna Sovinski,
• Jessica Roman,
• Alessandra Luchini,
• Lance Liotta,
• Remi Veneziano
• and Amanda Haymond

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Tumor Suppressor Merlin Offers a New Therapeutic Strategy for HER2-Low Breast Cancer

• ANJU ADVANI,
• LAYLA HASANZADAH,
• EMMA MATHEW,
• LINDA HUANG,
• Angela Rojas,
• Purva Gade,
• Marissa Howard
• and Lance Liotta

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Novel Role for Phosphorylated Merlin and Mitophagy Triggered PINK-1 in Neurofibromatosis Type 2 Meniningiomas

• EMMA MATHEW,
• Angela Rojas,
• ANJU ADVANI,
• LAYLA HASANZADAH,
• LINDA HUANG,
• Purva Gade,
• Marissa Howard,
• Ali Andalibi
• and Lance Liotta

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Secretory Mitophagy Exports p53: A new pro-tumor survival mechanism.

• LAYLA HASANZADAH,
• ANJU ADVANI,
• EMMA MATHEW,
• LINDA HUANG,
• Angela Rojas,
• Purva Gade,
• Marissa Howard
• and Lance Liotta

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

IF EVs: a new molecular measurement of mitochondrial health

• LINDA HUANG,
• ANJU ADVANI,
• EMMA MATHEW,
• LAYLA HASANZADAH,
• Olivia Montemurro,
• Angela Rojas,
• Purva Gade,
• Marissa Howard
• and Lance Liotta

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Saliva Genotyping Using the 96.96 IFC with SNP Type Assays

• AURORA RICHARD,
• SHREYES AIER,
• Cade Skislak,
• Amy Young
• and Lance Liotta

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Binding of indolicidin to the DMPC bilayer using molecular dynamics simulations

• KUBER GOHIL
• and Christopher Lockhart

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Network analysis of replica exchange simulations

• MARÍA JOSÉ DÍAZ DELGADO
• and Christopher Lockhart

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

De novo drug design for a protein binding site

• MUHAMMAD CHAWLA
• and Christopher Lockhart

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

RexDash: A Comprehensive Dashboard for Analyzing the Technical Performance of Replica Exchange Molecular Dynamics Simulations

• SOHAM JAIN
• and Christopher Lockhart

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Capturing Exosomes in Urine using a Polyamide 6 - Affinity Net

• ADYA MISRA,
• AZADA SAMADI,
• Rocio Cornero
• and Alessandra Luchini

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Application of Nylon Affinity Nets to Capture Tuberculosis Extracellular Vesicles and Identify Protein Biomarkers

• VIDHI SHARMA,
• MERICA PATRICIA TALLEY,
• Ahana Byne,
• Barbara Birkaya
• and Alessandra Luchini

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Optimization of Nucleo-Cytosol Separation to capture EZH2 subcellular localization in Non-Small Cell Lung Cancers

• LENA HASAN,
• RUSUL ABDULRAZZAQ,
• AANYA KOLLI,
• Abduljalil Alsubaie
• and Mariaelena Pierobon

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Deciphering Age-Associated Gene Expression Patterns in Colon Cancer: Implications for Older Patients' Risk and Survival

• ERIKA LI,
• NAVNEETH MURAL,
• Eric Twum
• and Aman Ullah

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Differential Gene Expression Analysis of Alzheimer & Type 1 Diabetic Patients

• SARA ABOUELNAGA,
• KAAN EGUZ,
• Brenda Ngo
• and Aman Ullah

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Machine Learning Models of CHI3L1 Mutant Pathogenicity using Computational Mutagenesis

• ALEXANDRA CARAUS
• and Iosif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Sequence-based Models of Antimicrobial Peptide Stability

• JASMINE MA
• and Iosif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Predicting optimal catalytic temperature of enzymes using Graph Convolutional Networks

• LUKE MEI
• and Iosif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

BERT Feature Embeddings Fused With Physiochemical Feature Representations Yields More Accurate and Versatile Model for Prediction of Blood Brain Barrier Penetrating Peptides

• MYTHREYA DHARANI
• and Iosif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Analysis of CFTR Gene Mutations in Cystic Fibrosis

• PRANAV PREM
• and Iosif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Assessing a Correlation between Predicted Protein Stability and Antibiotic Resistance of Beta-Lactamase Enzymes

• SARINA LI,
• SHARANYA TUMMA
• and Iosif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Using a Convolutional Neural Network to Classify Nanobodies on Neutralizing Ability Using Sequence Data for SARS-Cov-2

• NITHYA VINODH
• and losif Vaisman

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

Evaluation of differential G-protein subunit markers for HIV latent infection in Jurkat and A3R5.7 cells

• SAMUEL LI,
• LUKE MEHTA,
• Linda Chillin,
• Sameer Tiwari
• and Yuntao Wu

• 27 October 2023
• Volume 5 • 2023
• College of Science: School of Systems Biology

JSSR

The correlation between mouse behavior and cholinergic activity in the medial septum

• LAASYA RAVIPATI,
• PAYAS HIRA,
• Blanca E. Gutiérrez-Guzmán,
• Fatemeh F. Moghadam
• and Holger Dannenberg

• 27 October 2023
• Volume 5 • 2023
• Interdisciplinary Program in Neuroscience

JSSR

Ethylene Glycol is a Potential Positive Allosteric Modulator of GlyRα1 in Xenopus laevis Oocytes

• TAPAN SAPRE,
• DIBORAH GUTEMA,
• ANIYAH SYL,
• FAE JENSEN,
• Sophia Gee
• and Greta Ann Herin

• 27 October 2023
• Volume 5 • 2023
• Interdisciplinary Program in Neuroscience

JSSR

NeuroMorpho.Org agile release pipeline enables faster data sharing

• Cintia A. Martinez Cardenas,
• Valerie T. Nguyen,
• Lima Ghairatmal,
• Hafsa Rehman,
• Drew Di Donna,
• Joseph Ndiaye,
• Sadaf Alizai,
• Giorgio A. Ascoli
• and Carolina Tecuatl

• 27 October 2023
• Volume 5 • 2023
• Interdisciplinary Program in Neuroscience

JSSR

Utilizing Novel Reaction Setups to Develop Lipid Nanoparticles for mRNA Delivery

• SONIA SETH,
• DHRUV YELISETTI,
• Elijah McClendon,
• Brandon Speed,
• Dani Harrison,
• Masuma Rahman,
• Michael Girgis,
• Mohamad-Alameh Gabriel,
• Mikell Paige
• and Suman Alishetty

• 27 October 2023
• Volume 5 • 2023
• College of Engineering and Computing: Department of Bioengineering